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Where it would theoretically be nice if every function was neatly ordered

...but another problem is this: when you build a bridge, you know in advance what you need and what you don't. Nobody (sane) will demand that you add a platform for selling Coca-Cola and a pier at the bottom with an elevator to ground level,and whatnot mid-construction. In programming, you either work for military where you will get proper specification several inches thick, or you start developing and try to accommodate for sudden requirement changes on the fly. Good programmer is better at predicting which changes are more likely and designs their code so that those are relatively easy to implement. But when redesigning from scratch is not an option and refusing to change is not an option - spaghetti tower becomes the most viable option left.